mdadash.backend.analyses.native_contacts

Native Contacts Analysis

Classes

NativeContacts()

Native Contacts Analysis

class mdadash.backend.analyses.native_contacts.NativeContacts

Bases: WidgetBase

Native Contacts Analysis

This widget uses MDAnalysis.analysis.contacts.Contacts to calculate fraction of native contacts between two contacting groups. The two contacting AtomGroups in their reference conformation are created when this widget instance is created or whenever the inputs for the above Class are updated.

apply_parallel_results(values)

apply parallel results handler

description = 'Native Contacts Analysis'

get_parallel_job()

get parallel job handler

name = 'Native Contacts'

on_input_change(attribute, _old_value, new_value)

on_input_change handler

on_post_connect()

on_post_connect handler

on_post_create()

on_post_create handler

run_batch()

batch run handler

run_every_frame()

every-frame run handler